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Publications  for  the  collection  HAL LS2N-COMBI  for  2018

Total of the publications found : 31

Overview of LS2N-COMBI publications by types
ART_INT
COMM_INT
OUV
THESE
AUTRES
214222

International journals with reviewing committee (ART_INT)

    • [1] G. Fertin, I. Rusu, S. Vialette. The S-labeling problem: An algorithmic tour. In Discrete Applied Mathematics ; éd. Elsevier, 2018, vol. 246.
      https://hal.science/hal-01710032v1
    • [2] M. Razzaq, L. Paulevé, A. Siegel, J. Saez-Rodriguez, J. Bourdon, C. Guziolowski. Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data. In PLoS Computational Biology ; éd. PLOS, 2018, vol. 14.
      https://hal.science/hal-01897020v1
    • [3] R. Tito, S. Chaffron, C. Caenepeel, G. Lima-Mendez, J. Wang, S. Vieira-Silva, G. Falony, F. Hildebrand, Y. Darzi, L. Rymenans, C. Verspecht, P. Bork, S. Vermeire, M. Joossens, J. Raes. Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota. In Gut ; éd. BMJ Publishing Group, 2018.
      https://hal.science/hal-01893208v1
    • [4] S. Thiriet-Rupert, G. Carrier, C. Trottier, D. Eveillard, B. Schoefs, G. Bougaran, J. Cadoret, B. Chénais, B. Saint-Jean. Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea. In Algal Research - Biomass, Biofuels and Bioproducts ; éd. Elsevier, 2018, vol. 30.
      https://hal.science/hal-01677336v1
    • [5] A. Poret, C. Guziolowski. Therapeutic target discovery using Boolean network attractors: improvements of kali. In Royal Society Open Science ; éd. The Royal Society, 2018, vol. 5, num. 2.
      https://hal.science/hal-01395079v3
    • [6] G. Fertin, C. Lintzmayer, Z. Dias. Sorting permutations and binary strings by length-weighted rearrangements. In Theoretical Computer Science ; éd. Elsevier, 2018, vol. 715.
      https://hal.science/hal-01705181v1
    • [7] L. Chebouba, B. Miannay, D. Boughaci, C. Guziolowski. Discriminate the response of Acute Myeloid Leukemia patients to treatment by using proteomics data and Answer Set Programming. In BMC Bioinformatics ; éd. BioMed Central, 2018, vol. 19, num. S2.
      https://hal.science/hal-01988426v1
    • [8] L. Pelletier, I. Rusu. Common intervals and permutation reconstruction from MinMax -betweenness constraints. In Journal of Discrete Algorithms ; éd. Elsevier, 2018, vol. 49.
      https://hal.science/hal-01983336v1
    • [9] B. Miannay, S. Minvielle, F. Magrangeas, C. Guziolowski. Constraints on signaling network logic reveal functional subgraphs on Multiple Myeloma OMIC data. In BMC Systems Biology ; éd. BioMed Central, 2018, vol. 12(Suppl3).
      https://inserm.hal.science/inserm-01804825v1
    • [10] I. Rusu. Sorting signed permutations by reversals using link-cut trees. In Information Processing Letters ; éd. Elsevier, 2018, vol. 132.
      https://hal.science/hal-01983332v1
    • [11] M. Aite, M. Chevallier, C. Frioux, C. Trottier, J. Got, M. Cortés, S. Mendoza, G. Carrier, O. Dameron, N. Guillaudeux, M. Latorre, N. Loira, G. Markov, A. Maass, A. Siegel. Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models. In PLoS Computational Biology ; éd. PLOS, 2018, vol. 14, num. 5.
      https://univ-rennes.hal.science/hal-01807842v1
    • [12] G. Fertin, F. Hüffner, C. Komusiewicz, M. Sorge. Matching algorithms for assigning orthologs after genome duplication events. In Computational Biology and Chemistry ; éd. Elsevier, 2018, vol. 74.
      https://hal.science/hal-01911090v1
    • [13] H. Poling, D. Wu, N. Brown, M. Baker, T. Hausfeld, N. Huynh, S. Chaffron, J. Dunn, S. Hogan, J. Wells, M. Helmrath, M. Mahé. Mechanically induced development and maturation of human intestinal organoids in vivo. In Nature Biomedical Engineering ; éd. Nature Publishing Group, 2018, vol. 2, num. 6.
      https://hal.science/hal-01816387v1
    • [14] L. Chebouba, D. Boughaci, C. Guziolowski. Proteomics Versus Clinical Data and Stochastic Local Search Based Feature Selection for Acute Myeloid Leukemia Patients’ Classification. In Journal of Medical Systems ; éd. Springer Verlag (Germany), 2018, vol. 42, num. 7.
      https://hal.science/hal-01988416v1
    • [15] G. Fertin, L. Jankowiak, G. Jean. Prefix and suffix reversals on strings. In Discrete Applied Mathematics ; éd. Elsevier, 2018, vol. 246.
      https://hal.science/hal-01911089v1
    • [16] C. Frioux, E. Fremy, C. Trottier, A. Siegel. Scalable and exhaustive screening of metabolic functions carried out by microbial consortia. In Bioinformatics ; éd. Oxford University Press (OUP), 2018, vol. 34, num. 17.
      https://inria.hal.science/hal-01871600v1
    • [17] D. d'Alelio, D. Eveillard, V. Coles, L. Caputi, M. Ribera D’alcalà, D. Iudicone. Modelling the complexity of plankton communities exploiting omics potential: From present challenges to an integrative pipeline. In Current Opinion in Systems Biology ; éd. Elsevier, 2018.
      https://hal.science/hal-01909434v1
    • [19] B. Jagadeesan, P. Gerner-Smidt, M. Allard, S. Leuillet, A. Winkler, Y. Xiao, S. Chaffron, J. Vossen, S. Tang, M. Katase, P. Mcclure, B. Kimura, L. Ching Chai, J. Chapman, K. Grant. The Use of Next Generation Sequencing for Improving Food Safety: Translation into practice. In Food Microbiology ; éd. Elsevier, 2018.
      https://hal.science/hal-01934206v1
    • [20] A. Oliveira, G. Fertin, U. Dias, Z. Dias. Sorting signed circular permutations by super short operations. In Algorithms for Molecular Biology ; éd. BioMed Central, 2018, vol. 13, num. 1.
      https://hal.science/hal-01911093v1
    • [21] D. Mandakovic, C. Rojas, J. Maldonado, M. Latorre, D. Travisany, E. Delage, A. Bihouée, G. Jean, F. Diaz, B. Fernández-Gómez, P. Cabrera, A. Gaete, C. Latorre, R. Gutierrez, A. Maass, V. Cambiazo, S. Navarrete, D. Eveillard, M. Gonzalez. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. In Scientific Reports ; éd. Nature Publishing Group, 2018, vol. 8, num. 1.
      https://hal.science/hal-01774624v1

International conferences with reviewing committee (COMM_INT)

    • [22] S. Ayata, E. Faure, A. Benoiston, F. Not, O. Aumont, L. Guidi, S. Chaffron, D. Eveillard, L. Bittner. From plankton functional traits to marine ecosystem functions: Assessing functional diversity of plankton communities from high throughput -omics data and its impact on oceanic biogeochemical cycles. In Functional Ecology Conference, 2018, Nancy, France.
      https://hal.science/hal-04024046v1
    • [23] G. Fertin, J. Fradin, C. Komusiewicz. On the Maximum Colorful Arborescence Problem and Color Hierarchy Graph Structure. In Annual Symposium on Combinatorial Pattern Matching -- CPM 2018, juillet 2018, Qingdao, Chine.
      https://hal.science/hal-02081156v1
    • [24] C. Frioux, E. Fremy, C. Trottier, A. Siegel. Scalable and exhaustive screening of metabolic functions carried out by microbial consortia. In ECCB - 2018 - 17th European Conference on Computational Biology, septembre 2018, Athènes, Grèce.
      https://inria.hal.science/hal-01946860v1
    • [25] A. Rodrigues Oliveira, G. Jean, G. Fertin, U. Dias, Z. Dias. Super Short Reversals on Both Gene Order and Intergenic Sizes. In Advances in Bioinformatics and Computational Biology - 11th Brazilian Symposium on Bioinformatics -- BSB 2018, octobre 2018, Niteroi, Brésil.In Springer (éds.), . , 2018.
      https://hal.science/hal-02081164v1

Books - books sections - directions of work or proceedings (OUV)

    • [26] M. Razzaq, R. Kaminski, J. Romero, T. Schaub, J. Bourdon, C. Guziolowski. Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data. 24-08-2018
      https://hal.science/hal-01988432v1
    • [27] L. Bittner, L. Guidi, S. Chaffron, D. Eveillard. Les microbiomes de l'océan : une démarche à haut débit pour une compréhension globale et systémique. In Microbiodiversité : un nouveau regard. 01-12-2018
      https://hal.science/hal-01996304v1

PhD Thesis (THESE)

    • [28] J. Fradin. Complex graphs in biology : problems, algorithms and evaluation. Thèses : Université de Nantes, Faculté des sciences et des techniques, Ecole Doctorale MATHSTIC, .
      https://hal.science/tel-02081176v1

Other publications (AUTRES)

    • [30] S. Ayata, E. Faure, A. Benoiston, O. Silva, V. Sonnet, F. Benedetti, F. Not, O. Aumont, L. Guidi, S. Chaffron, D. Eveillard, L. Bittner. Assessing functional diversity of plankton communities from high throughput –omics data. In Colloque de Bilan et de Prospective du programme LEFE, mars 2018, Clermont-Ferrand, France.
      https://hal.science/hal-04021818v1
    • [31] A. Benoiston, E. Eveillard, S. Chaffron, S. Ayata, C. Bowler, L. Guidi, E. Delage, G. Jean, L. Bittner, T. Corrdinators. Biological pump processes are driven by microbial networks in the global oligotrophic ocean. In ISME17, août 2018, Leipzig, Allemagne.
      https://hal.science/hal-04021817v1
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